GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c21_14740 Pp3c21_14740	Chr21	9332941	9338081	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c21_14740V3.1 Pp3c21_14740V3.1 PAC:32914982	High	No	2734		Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -29.140 AMFE: -0.676 GC content %: 43.087
Ppatens_Pp3c21_14740V3.2 Pp3c21_14740V3.2 PAC:32914983	High	No	1104		Get ORF Coding potential... Type: noncoding Potential: -1.431 Folding energies... MFEI: -30.335 AMFE: -0.662 GC content %: 45.833
Ppatens_Pp3c21_14740V3.3 Pp3c21_14740V3.3 PAC:32914984	High	No	1020		Get ORF Coding potential... Type: noncoding Potential: -1.426 Folding energies... MFEI: -29.618 AMFE: -0.648 GC content %: 45.686

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).