GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c21_3750 Pp3c21_3750	Chr21	2272090	2273169	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c21_3750V3.1 Pp3c21_3750V3.1 PAC:32916522	High	No	939		Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -29.915 AMFE: -0.669 GC content %: 44.728
Ppatens_Pp3c21_3750V3.2 Pp3c21_3750V3.2 PAC:32916523	High	No	1080		Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.870 AMFE: -0.665 GC content %: 43.426

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).