Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c21_40 Pp3c21_40 |
Chr21 | 13221 | 14079 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c21_40V3.1 Pp3c21_40V3.1 PAC:32916665 |
High | No | 327 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -24.465 AMFE: -0.519 GC content %: 47.095 | |
Ppatens_Pp3c21_40V3.2 Pp3c21_40V3.2 PAC:32916666 |
High | No | 468 | Get ORF Coding potential... Type: noncoding Potential: -1.405 Folding energies... MFEI: -26.453 AMFE: -0.581 GC content %: 45.513 | |
Ppatens_Pp3c21_40V3.3 Pp3c21_40V3.3 PAC:32916667 |
High | No | 252 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -27.937 AMFE: -0.572 GC content %: 48.810 |