Gene
Ppatens Pp3c21 520
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c21_520 Pp3c21_520 |
Chr21 | 335027 | 339850 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c21_520V3.1 Pp3c21_520V3.1 PAC:32914478 |
High | No | 2983 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -30.443 AMFE: -0.659 GC content %: 46.162 | |
| Ppatens_Pp3c21_520V3.2 Pp3c21_520V3.2 PAC:32914479 |
High | No | 3001 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -30.573 AMFE: -0.664 GC content %: 46.051 | |
| Ppatens_Pp3c21_520V3.3 Pp3c21_520V3.3 PAC:32914480 |
High | No | 3141 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -30.181 AMFE: -0.665 GC content %: 45.368 | |
| Ppatens_Pp3c21_520V3.4 Pp3c21_520V3.4 PAC:32914481 |
High | No | 3289 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -30.198 AMFE: -0.667 GC content %: 45.272 | |
| Ppatens_Pp3c21_520V3.5 Pp3c21_520V3.5 PAC:32914483 |
High | No | 942 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -32.665 AMFE: -0.672 GC content %: 48.620 | |
| Ppatens_Pp3c21_520V3.6 Pp3c21_520V3.6 PAC:32914482 |
High | No | 1359 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -31.847 AMFE: -0.683 GC content %: 46.652 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
