GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c21_810 Pp3c21_810	Chr21	571591	572456	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c21_810V3.1 Pp3c21_810V3.1 PAC:32916448	High	No	703		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -24.253 AMFE: -0.594 GC content %: 40.825
Ppatens_Pp3c21_810V3.2 Pp3c21_810V3.2 PAC:32916449	High	No	204		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -28.529 AMFE: -0.554 GC content %: 51.471

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).