GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_10170 Pp3c22_10170	Chr22	6391445	6394167	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_10170V3.1 Pp3c22_10170V3.1 PAC:32905187	High	No	1162		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -26.850 AMFE: -0.624 GC content %: 43.029
Ppatens_Pp3c22_10170V3.2 Pp3c22_10170V3.2 PAC:32905188	High	No	1994		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -27.031 AMFE: -0.627 GC content %: 43.079

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).