GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_10740 Pp3c22_10740	Chr22	6817288	6817916	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_10740V3.1 Pp3c22_10740V3.1 PAC:32904096	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -19.487 AMFE: -0.530 GC content %: 36.752
Ppatens_Pp3c22_10740V3.2 Pp3c22_10740V3.2 PAC:32904097	High	No	629		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -24.261 AMFE: -0.641 GC content %: 37.838

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).