GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_12100 Pp3c22_12100	Chr22	7824916	7825458	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_12100V3.1 Pp3c22_12100V3.1 PAC:32903377	High	No	306		Get ORF Coding potential... Type: noncoding Potential: -0.198 Folding energies... MFEI: -24.346 AMFE: -0.532 GC content %: 45.752
Ppatens_Pp3c22_12100V3.2 Pp3c22_12100V3.2 PAC:32903378	High	No	543		Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -24.162 AMFE: -0.542 GC content %: 44.567

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).