GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_12410 Pp3c22_12410	Chr22	8091214	8092995	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_12410V3.1 Pp3c22_12410V3.1 PAC:32905243	High	No	1782		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -31.021 AMFE: -0.686 GC content %: 45.230
Ppatens_Pp3c22_12410V3.2 Pp3c22_12410V3.2 PAC:32905244	High	No	676		Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -29.689 AMFE: -0.669 GC content %: 44.379

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).