Gene
Ppatens Pp3c22 1570
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c22_1570 Pp3c22_1570 |
Chr22 | 1118657 | 1121841 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c22_1570V3.1 Pp3c22_1570V3.1 PAC:32903092 |
High | No | 1511 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -27.240 AMFE: -0.646 GC content %: 42.158 | |
| Ppatens_Pp3c22_1570V3.10 Pp3c22_1570V3.10 PAC:32903093 |
High | No | 1121 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.171 AMFE: -0.651 GC content %: 43.265 | |
| Ppatens_Pp3c22_1570V3.4 Pp3c22_1570V3.4 PAC:32903086 |
High | No | 2119 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.485 AMFE: -0.640 GC content %: 42.945 | |
| Ppatens_Pp3c22_1570V3.5 Pp3c22_1570V3.5 PAC:32903087 |
High | No | 2262 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -27.604 AMFE: -0.643 GC content %: 42.927 | |
| Ppatens_Pp3c22_1570V3.6 Pp3c22_1570V3.6 PAC:32903088 |
High | No | 2262 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -27.299 AMFE: -0.643 GC content %: 42.485 | |
| Ppatens_Pp3c22_1570V3.7 Pp3c22_1570V3.7 PAC:32903089 |
High | No | 1629 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.545 AMFE: -0.653 GC content %: 42.173 | |
| Ppatens_Pp3c22_1570V3.8 Pp3c22_1570V3.8 PAC:32903090 |
High | No | 1848 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -27.543 AMFE: -0.661 GC content %: 41.667 | |
| Ppatens_Pp3c22_1570V3.9 Pp3c22_1570V3.9 PAC:32903091 |
High | No | 1492 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -28.257 AMFE: -0.669 GC content %: 42.225 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
