GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_17370 Pp3c22_17370	Chr22	11237069	11240898	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_17370V3.1 Pp3c22_17370V3.1 PAC:32904788	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -1.360 Folding energies... MFEI: -27.416 AMFE: -0.652 GC content %: 42.063
Ppatens_Pp3c22_17370V3.2 Pp3c22_17370V3.2 PAC:32904789	High	No	1471		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -31.781 AMFE: -0.667 GC content %: 47.655

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).