GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_2750 Pp3c22_2750	Chr22	1872278	1874021	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_2750V3.1 Pp3c22_2750V3.1 PAC:32905164	High	No	910		Get ORF Coding potential... Type: noncoding Potential: -0.632 Folding energies... MFEI: -29.714 AMFE: -0.669 GC content %: 44.396
Ppatens_Pp3c22_2750V3.2 Pp3c22_2750V3.2 PAC:32905165	High	No	1255		Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -27.004 AMFE: -0.657 GC content %: 41.116
Ppatens_Pp3c22_2750V3.3 Pp3c22_2750V3.3 PAC:32905166	High	No	309		Get ORF Coding potential... Type: noncoding Potential: -0.870 Folding energies... MFEI: -29.417 AMFE: -0.602 GC content %: 48.867

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).