GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c22_7720 Pp3c22_7720	Chr22	4767406	4768626	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c22_7720V3.1 Pp3c22_7720V3.1 PAC:32902815	High	No	591		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -29.628 AMFE: -0.619 GC content %: 47.885
Ppatens_Pp3c22_7720V3.2 Pp3c22_7720V3.2 PAC:32902816	High	No	622		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -30.016 AMFE: -0.627 GC content %: 47.910
Ppatens_Pp3c22_7720V3.3 Pp3c22_7720V3.3 PAC:32902817	High	No	744		Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -28.790 AMFE: -0.602 GC content %: 47.849
Ppatens_Pp3c22_7720V3.4 Pp3c22_7720V3.4 PAC:32902818	High	No	560		Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -31.500 AMFE: -0.663 GC content %: 47.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).