GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c23_12490 Pp3c23_12490	Chr23	8447814	8453565	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c23_12490V3.1 Pp3c23_12490V3.1 PAC:32948977	High	No	671		Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -27.675 AMFE: -0.661 GC content %: 41.878
Ppatens_Pp3c23_12490V3.2 Pp3c23_12490V3.2 PAC:32948978	High	No	4076		Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -28.427 AMFE: -0.659 GC content %: 43.131

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).