Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c23_15790 Pp3c23_15790 |
Chr23 | 10494965 | 10497559 | Phytozome | v3.3 | Physcomitrella_patens | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c23_15790V3.2 Pp3c23_15790V3.2 PAC:32950246 |
Low | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -28.981 AMFE: -0.655 GC content %: 44.243 | |
Ppatens_Pp3c23_15790V3.3 Pp3c23_15790V3.3 PAC:32950247 |
Low | No | 1596 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -27.769 AMFE: -0.646 GC content %: 42.982 | |
Ppatens_Pp3c23_15790V3.4 Pp3c23_15790V3.4 PAC:32950248 |
Low | No | 1596 | Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -28.127 AMFE: -0.648 GC content %: 43.421 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c23_15790V3.2 | SwissProt | 2015-06-01 | Q9FIJ2 | 4.0e-20 |
Ppatens_Pp3c23_15790V3.3 | SwissProt | 2015-06-01 | Q9FIJ2 | 2.0e-21 |
Ppatens_Pp3c23_15790V3.4 | SwissProt | 2015-06-01 | Q9FIJ2 | 6.0e-20 |