Gene
Ppatens Pp3c23 18220
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c23_18220 Pp3c23_18220 |
Chr23 | 12017703 | 12020970 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c23_18220V3.1 Pp3c23_18220V3.1 PAC:32949598 |
High | No | 1162 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -33.322 AMFE: -0.683 GC content %: 48.795 | |
| Ppatens_Pp3c23_18220V3.2 Pp3c23_18220V3.2 PAC:32949599 |
High | No | 1120 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -33.000 AMFE: -0.674 GC content %: 48.929 | |
| Ppatens_Pp3c23_18220V3.3 Pp3c23_18220V3.3 PAC:32949600 |
High | No | 1218 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -33.194 AMFE: -0.682 GC content %: 48.686 | |
| Ppatens_Pp3c23_18220V3.4 Pp3c23_18220V3.4 PAC:32949601 |
High | No | 1064 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -32.810 AMFE: -0.669 GC content %: 49.060 | |
| Ppatens_Pp3c23_18220V3.5 Pp3c23_18220V3.5 PAC:32949603 |
High | No | 1096 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -32.427 AMFE: -0.680 GC content %: 47.719 | |
| Ppatens_Pp3c23_18220V3.6 Pp3c23_18220V3.6 PAC:32949604 |
High | No | 1054 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -31.992 AMFE: -0.669 GC content %: 47.818 | |
| Ppatens_Pp3c23_18220V3.7 Pp3c23_18220V3.7 PAC:32949605 |
High | No | 1152 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -32.283 AMFE: -0.677 GC content %: 47.656 | |
| Ppatens_Pp3c23_18220V3.8 Pp3c23_18220V3.8 PAC:32949606 |
High | No | 998 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -31.874 AMFE: -0.665 GC content %: 47.896 | |
| Ppatens_Pp3c23_18220V3.9 Pp3c23_18220V3.9 PAC:32949602 |
High | No | 940 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -32.415 AMFE: -0.667 GC content %: 48.617 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
