GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c23_22030 Pp3c23_22030	Chr23	14538280	14540104	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c23_22030V3.1 Pp3c23_22030V3.1 PAC:32950936	High	No	898		Get ORF Coding potential... Type: noncoding Potential: -0.074 Folding energies... MFEI: -31.180 AMFE: -0.651 GC content %: 47.884
Ppatens_Pp3c23_22030V3.2 Pp3c23_22030V3.2 PAC:32950937	High	No	1144		Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -31.093 AMFE: -0.676 GC content %: 45.979
Ppatens_Pp3c23_22030V3.3 Pp3c23_22030V3.3 PAC:32950938	High	No	1435		Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -30.990 AMFE: -0.679 GC content %: 45.645

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).