GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c23_2730 Pp3c23_2730	Chr23	1771150	1772557	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c23_2730V3.1 Pp3c23_2730V3.1 PAC:32950666	High	No	744		Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -27.581 AMFE: -0.679 GC content %: 40.591
Ppatens_Pp3c23_2730V3.2 Pp3c23_2730V3.2 PAC:32950667	High	No	758		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -28.298 AMFE: -0.658 GC content %: 43.008

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).