Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c23_7600 Pp3c23_7600 |
Chr23 | 5123105 | 5124319 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c23_7600V3.1 Pp3c23_7600V3.1 PAC:32949481 |
Low | Yes | 1215 | Get ORF Coding potential... Type: noncoding Potential: -1.308 Folding energies... MFEI: -33.243 AMFE: -0.693 GC content %: 47.984 | |
Ppatens_Pp3c23_7600V3.2 Pp3c23_7600V3.2 PAC:32949482 |
High | No | 291 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -32.337 AMFE: -0.640 GC content %: 50.515 |