GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c24_10700 Pp3c24_10700	Chr24	7383951	7384344	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c24_10700V3.1 Pp3c24_10700V3.1 PAC:32909824	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -29.701 AMFE: -0.609 GC content %: 48.756
Ppatens_Pp3c24_10700V3.2 Pp3c24_10700V3.2 PAC:32909825	High	No	394		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -30.127 AMFE: -0.615 GC content %: 48.985

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).