Gene
Ppatens Pp3c24 16120
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c24_16120 Pp3c24_16120 |
Chr24 | 10597843 | 10599900 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c24_16120V3.1 Pp3c24_16120V3.1 PAC:32910347 |
High | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -28.451 AMFE: -0.658 GC content %: 43.210 | |
| Ppatens_Pp3c24_16120V3.2 Pp3c24_16120V3.2 PAC:32910348 |
High | No | 814 | Get ORF Coding potential... Type: noncoding Potential: -0.635 Folding energies... MFEI: -28.993 AMFE: -0.669 GC content %: 43.366 | |
| Ppatens_Pp3c24_16120V3.3 Pp3c24_16120V3.3 PAC:32910349 |
High | No | 883 | Get ORF Coding potential... Type: noncoding Potential: -0.656 Folding energies... MFEI: -29.128 AMFE: -0.673 GC content %: 43.262 | |
| Ppatens_Pp3c24_16120V3.4 Pp3c24_16120V3.4 PAC:32910350 |
High | No | 995 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -30.131 AMFE: -0.689 GC content %: 43.719 | |
| Ppatens_Pp3c24_16120V3.5 Pp3c24_16120V3.5 PAC:32910351 |
High | No | 1232 | Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -28.068 AMFE: -0.693 GC content %: 40.503 | |
| Ppatens_Pp3c24_16120V3.6 Pp3c24_16120V3.6 PAC:32910352 |
High | No | 709 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -26.784 AMFE: -0.633 GC content %: 42.313 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
