GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c24_17550 Pp3c24_17550	Chr24	11563258	11564776	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c24_17550V3.1 Pp3c24_17550V3.1 PAC:32910632	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -26.504 AMFE: -0.560 GC content %: 47.304
Ppatens_Pp3c24_17550V3.2 Pp3c24_17550V3.2 PAC:32910633	High	No	932		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -29.260 AMFE: -0.610 GC content %: 47.961
Ppatens_Pp3c24_17550V3.3 Pp3c24_17550V3.3 PAC:32910634	High	No	1006		Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -27.883 AMFE: -0.593 GC content %: 47.018

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).