GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c24_18480 Pp3c24_18480	Chr24	12417724	12419719	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c24_18480V3.1 Pp3c24_18480V3.1 PAC:32909876	High	No	634		Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -23.565 AMFE: -0.667 GC content %: 35.331
Ppatens_Pp3c24_18480V3.2 Pp3c24_18480V3.2 PAC:32909877	High	No	826		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -19.528 AMFE: -0.669 GC content %: 29.177
Ppatens_Pp3c24_18480V3.3 Pp3c24_18480V3.3 PAC:32909875	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -26.267 AMFE: -0.558 GC content %: 47.111

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).