GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c24_20280 Pp3c24_20280	Chr24	13382367	13382962	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c24_20280V3.1 Pp3c24_20280V3.1 PAC:32909224	High	No	213		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -30.610 AMFE: -0.639 GC content %: 47.887
Ppatens_Pp3c24_20280V3.2 Pp3c24_20280V3.2 PAC:32909225	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -27.836 AMFE: -0.599 GC content %: 46.477

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).