GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c24_5340 Pp3c24_5340	Chr24	3676761	3677260	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c24_5340V3.1 Pp3c24_5340V3.1 PAC:32910073	High	No	500		Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -33.860 AMFE: -0.646 GC content %: 52.400
Ppatens_Pp3c24_5340V3.2 Pp3c24_5340V3.2 PAC:32910074	High	No	297		Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -31.717 AMFE: -0.620 GC content %: 51.178

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).