Gene
Ppatens Pp3c24 7810
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c24_7810 Pp3c24_7810 |
Chr24 | 5236929 | 5240609 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c24_7810V3.1 Pp3c24_7810V3.1 PAC:32909900 |
High | No | 826 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -26.513 AMFE: -0.646 GC content %: 41.041 | |
| Ppatens_Pp3c24_7810V3.10 Pp3c24_7810V3.10 PAC:32909911 |
High | No | 1800 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -26.628 AMFE: -0.668 GC content %: 39.833 | |
| Ppatens_Pp3c24_7810V3.11 Pp3c24_7810V3.11 PAC:32909912 |
High | No | 1868 | Get ORF Coding potential... Type: noncoding Potential: -1.343 Folding energies... MFEI: -26.933 AMFE: -0.672 GC content %: 40.096 | |
| Ppatens_Pp3c24_7810V3.12 Pp3c24_7810V3.12 PAC:32909913 |
High | No | 1879 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -26.631 AMFE: -0.667 GC content %: 39.915 | |
| Ppatens_Pp3c24_7810V3.13 Pp3c24_7810V3.13 PAC:32909914 |
High | No | 2011 | Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -26.599 AMFE: -0.667 GC content %: 39.881 | |
| Ppatens_Pp3c24_7810V3.14 Pp3c24_7810V3.14 PAC:32909915 |
High | No | 2370 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -26.093 AMFE: -0.669 GC content %: 38.987 | |
| Ppatens_Pp3c24_7810V3.15 Pp3c24_7810V3.15 PAC:32909916 |
High | No | 1889 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -26.903 AMFE: -0.670 GC content %: 40.127 | |
| Ppatens_Pp3c24_7810V3.16 Pp3c24_7810V3.16 PAC:32909917 |
High | No | 2031 | Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -26.608 AMFE: -0.667 GC content %: 39.882 | |
| Ppatens_Pp3c24_7810V3.17 Pp3c24_7810V3.17 PAC:32909918 |
High | No | 2401 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -26.139 AMFE: -0.670 GC content %: 39.025 | |
| Ppatens_Pp3c24_7810V3.18 Pp3c24_7810V3.18 PAC:32909905 |
High | No | 408 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -29.779 AMFE: -0.620 GC content %: 48.039 | |
| Ppatens_Pp3c24_7810V3.19 Pp3c24_7810V3.19 PAC:32909906 |
High | No | 408 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -29.779 AMFE: -0.620 GC content %: 48.039 | |
| Ppatens_Pp3c24_7810V3.2 Pp3c24_7810V3.2 PAC:32909901 |
High | No | 1511 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -25.903 AMFE: -0.659 GC content %: 39.312 | |
| Ppatens_Pp3c24_7810V3.3 Pp3c24_7810V3.3 PAC:32909902 |
High | No | 941 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -26.121 AMFE: -0.635 GC content %: 41.126 | |
| Ppatens_Pp3c24_7810V3.4 Pp3c24_7810V3.4 PAC:32909903 |
High | No | 1020 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -26.961 AMFE: -0.655 GC content %: 41.176 | |
| Ppatens_Pp3c24_7810V3.5 Pp3c24_7810V3.5 PAC:32909904 |
High | No | 1151 | Get ORF Coding potential... Type: noncoding Potential: -1.324 Folding energies... MFEI: -26.785 AMFE: -0.655 GC content %: 40.921 | |
| Ppatens_Pp3c24_7810V3.6 Pp3c24_7810V3.6 PAC:32909907 |
High | No | 927 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -27.303 AMFE: -0.661 GC content %: 41.316 | |
| Ppatens_Pp3c24_7810V3.7 Pp3c24_7810V3.7 PAC:32909908 |
High | No | 1024 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -26.895 AMFE: -0.662 GC content %: 40.625 | |
| Ppatens_Pp3c24_7810V3.8 Pp3c24_7810V3.8 PAC:32909909 |
High | No | 1741 | Get ORF Coding potential... Type: noncoding Potential: -1.341 Folding energies... MFEI: -27.260 AMFE: -0.684 GC content %: 39.862 | |
| Ppatens_Pp3c24_7810V3.9 Pp3c24_7810V3.9 PAC:32909910 |
High | No | 1786 | Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -27.010 AMFE: -0.677 GC content %: 39.922 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
