GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c25_13570 Pp3c25_13570	Chr25	9607646	9609321	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c25_13570V3.1 Pp3c25_13570V3.1 PAC:32980572	High	No	1013		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -26.456 AMFE: -0.650 GC content %: 40.671
Ppatens_Pp3c25_13570V3.2 Pp3c25_13570V3.2 PAC:32980573	High	No	1067		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -26.645 AMFE: -0.646 GC content %: 41.237
Ppatens_Pp3c25_13570V3.3 Pp3c25_13570V3.3 PAC:32980574	High	No	1252		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -25.687 AMFE: -0.634 GC content %: 40.495
Ppatens_Pp3c25_13570V3.4 Pp3c25_13570V3.4 PAC:32980575	High	No	1333		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -27.022 AMFE: -0.665 GC content %: 40.660
Ppatens_Pp3c25_13570V3.5 Pp3c25_13570V3.5 PAC:32980576	High	No	787		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.849 AMFE: -0.631 GC content %: 42.567

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).