GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c25_2200 Pp3c25_2200	Chr25	1376614	1378336	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c25_2200V3.1 Pp3c25_2200V3.1 PAC:32980299	High	No	853		Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -31.184 AMFE: -0.638 GC content %: 48.886
Ppatens_Pp3c25_2200V3.2 Pp3c25_2200V3.2 PAC:32980300	High	No	1530		Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -31.098 AMFE: -0.659 GC content %: 47.190

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).