GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c25_9260 Pp3c25_9260	Chr25	6465926	6466722	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c25_9260V3.1 Pp3c25_9260V3.1 PAC:32979663	High	No	451		Get ORF Coding potential... Type: noncoding Potential: -1.409 Folding energies... MFEI: -32.882 AMFE: -0.648 GC content %: 50.776
Ppatens_Pp3c25_9260V3.2 Pp3c25_9260V3.2 PAC:32979664	High	No	797		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -32.535 AMFE: -0.665 GC content %: 48.934

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).