Gene
Ppatens Pp3c26 530
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c26_530 Pp3c26_530 |
Chr26 | 210113 | 211836 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c26_530V3.1 Pp3c26_530V3.1 PAC:32917051 |
High | No | 1316 | Get ORF Coding potential... Type: noncoding Potential: -1.411 Folding energies... MFEI: -26.945 AMFE: -0.633 GC content %: 42.553 | |
| Ppatens_Pp3c26_530V3.2 Pp3c26_530V3.2 PAC:32917052 |
High | No | 1318 | Get ORF Coding potential... Type: noncoding Potential: -1.416 Folding energies... MFEI: -27.557 AMFE: -0.639 GC content %: 43.096 | |
| Ppatens_Pp3c26_530V3.3 Pp3c26_530V3.3 PAC:32917053 |
High | No | 1359 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -27.609 AMFE: -0.637 GC content %: 43.341 | |
| Ppatens_Pp3c26_530V3.4 Pp3c26_530V3.4 PAC:32917054 |
High | No | 1597 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -27.833 AMFE: -0.647 GC content %: 43.018 | |
| Ppatens_Pp3c26_530V3.5 Pp3c26_530V3.5 PAC:32917048 |
High | No | 1402 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -27.703 AMFE: -0.640 GC content %: 43.295 | |
| Ppatens_Pp3c26_530V3.6 Pp3c26_530V3.6 PAC:32917049 |
High | No | 1424 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -28.195 AMFE: -0.644 GC content %: 43.750 | |
| Ppatens_Pp3c26_530V3.7 Pp3c26_530V3.7 PAC:32917050 |
High | No | 788 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -29.518 AMFE: -0.619 GC content %: 47.716 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
