GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c2_11190 Pp3c2_11190	Chr02	7508036	7509243	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c2_11190V3.1 Pp3c2_11190V3.1 PAC:32933880	High	No	1021		Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -32.977 AMFE: -0.653 GC content %: 50.539
Ppatens_Pp3c2_11190V3.2 Pp3c2_11190V3.2 PAC:32933881	High	No	1142		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -32.846 AMFE: -0.660 GC content %: 49.737
Ppatens_Pp3c2_11190V3.3 Pp3c2_11190V3.3 PAC:32933882	High	No	957		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -33.386 AMFE: -0.667 GC content %: 50.052

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).