GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c2_23130 Pp3c2_23130	Chr02	15405615	15407905	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c2_23130V3.1 Pp3c2_23130V3.1 PAC:32937175	High	No	1071		Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -34.967 AMFE: -0.688 GC content %: 50.794
Ppatens_Pp3c2_23130V3.2 Pp3c2_23130V3.2 PAC:32937176	High	No	1597		Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -32.580 AMFE: -0.662 GC content %: 49.217

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).