GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c2_25450 Pp3c2_25450	Chr02	17180821	17182721	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c2_25450V3.1 Pp3c2_25450V3.1 PAC:32937496	High	No	392		Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -29.541 AMFE: -0.643 GC content %: 45.918
Ppatens_Pp3c2_25450V3.2 Pp3c2_25450V3.2 PAC:32937497	High	No	1195		Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -23.623 AMFE: -0.573 GC content %: 41.255
Ppatens_Pp3c2_25450V3.3 Pp3c2_25450V3.3 PAC:32937498	High	No	1272		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.064 AMFE: -0.585 GC content %: 41.116
Ppatens_Pp3c2_25450V3.4 Pp3c2_25450V3.4 PAC:32937499	High	No	1457		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -26.232 AMFE: -0.629 GC content %: 41.730

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).