GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c2_35920 Pp3c2_35920	Chr02	24317454	24320181	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c2_35920V3.1 Pp3c2_35920V3.1 PAC:32933364	High	No	2467		Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -23.255 AMFE: -0.630 GC content %: 36.887
Ppatens_Pp3c2_35920V3.2 Pp3c2_35920V3.2 PAC:32933365	High	No	1221		Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -28.657 AMFE: -0.602 GC content %: 47.584

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).