GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c3_10910 Pp3c3_10910	Chr03	7748324	7750268	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c3_10910V3.1 Pp3c3_10910V3.1 PAC:32942013	High	No	1003		Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -25.823 AMFE: -0.591 GC content %: 43.669
Ppatens_Pp3c3_10910V3.2 Pp3c3_10910V3.2 PAC:32942014	High	No	1266		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -26.627 AMFE: -0.612 GC content %: 43.523
Ppatens_Pp3c3_10910V3.3 Pp3c3_10910V3.3 PAC:32942015	High	No	1000		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -25.630 AMFE: -0.588 GC content %: 43.600
Ppatens_Pp3c3_10910V3.4 Pp3c3_10910V3.4 PAC:32942016	High	No	1263		Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -26.516 AMFE: -0.610 GC content %: 43.468
Ppatens_Pp3c3_10910V3.5 Pp3c3_10910V3.5 PAC:32942017	High	No	719		Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -26.175 AMFE: -0.609 GC content %: 42.976

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).