Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c3_14139 Pp3c3_14139 |
Chr03 | 10087097 | 10088998 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c3_14139V3.1 Pp3c3_14139V3.1 PAC:32941101 |
High | No | 835 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -28.551 AMFE: -0.607 GC content %: 47.066 | |
Ppatens_Pp3c3_14139V3.2 Pp3c3_14139V3.2 PAC:32941102 |
High | No | 888 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -28.333 AMFE: -0.612 GC content %: 46.284 | |
Ppatens_Pp3c3_14139V3.3 Pp3c3_14139V3.3 PAC:32941103 |
High | No | 857 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -31.494 AMFE: -0.638 GC content %: 49.358 |