Gene
Ppatens Pp3c3 16660
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c3_16660 Pp3c3_16660 |
Chr03 | 11765967 | 11768763 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c3_16660V3.1 Pp3c3_16660V3.1 PAC:32943402 |
High | No | 734 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -30.559 AMFE: -0.676 GC content %: 45.232 | |
| Ppatens_Pp3c3_16660V3.2 Pp3c3_16660V3.2 PAC:32943396 |
High | No | 1976 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -29.686 AMFE: -0.672 GC content %: 44.180 | |
| Ppatens_Pp3c3_16660V3.3 Pp3c3_16660V3.3 PAC:32943397 |
High | No | 1775 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -29.363 AMFE: -0.669 GC content %: 43.887 | |
| Ppatens_Pp3c3_16660V3.4 Pp3c3_16660V3.4 PAC:32943398 |
High | No | 1880 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -29.856 AMFE: -0.675 GC content %: 44.255 | |
| Ppatens_Pp3c3_16660V3.5 Pp3c3_16660V3.5 PAC:32943399 |
High | No | 1812 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -29.647 AMFE: -0.666 GC content %: 44.536 | |
| Ppatens_Pp3c3_16660V3.6 Pp3c3_16660V3.6 PAC:32943400 |
High | No | 2064 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -29.903 AMFE: -0.672 GC content %: 44.525 | |
| Ppatens_Pp3c3_16660V3.7 Pp3c3_16660V3.7 PAC:32943401 |
High | No | 1611 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -29.565 AMFE: -0.668 GC content %: 44.258 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
