GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c3_29340 Pp3c3_29340	Chr03	20080154	20080833	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c3_29340V3.1 Pp3c3_29340V3.1 PAC:32944410	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -22.886 AMFE: -0.479 GC content %: 47.761
Ppatens_Pp3c3_29340V3.2 Pp3c3_29340V3.2 PAC:32944411	High	No	385		Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -23.922 AMFE: -0.515 GC content %: 46.494

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).