Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c3_3030 Pp3c3_3030 |
Chr03 | 1770151 | 1772238 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c3_3030V3.1 Pp3c3_3030V3.1 PAC:32944706 |
Low | No | 231 | Get ORF Coding potential... Type: noncoding Potential: -0.537 Folding energies... MFEI: -31.818 AMFE: -0.613 GC content %: 51.948 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c3_3030V3.1 | SwissProt | 2015-06-01 | Q9LPR8 | 3.0e-8 |