Gene
Ppatens Pp3c3 30670
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c3_30670 Pp3c3_30670 |
Chr03 | 20937941 | 20940592 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c3_30670V3.1 Pp3c3_30670V3.1 PAC:32940234 |
High | No | 1466 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -28.861 AMFE: -0.655 GC content %: 44.065 | |
| Ppatens_Pp3c3_30670V3.2 Pp3c3_30670V3.2 PAC:32940235 |
High | No | 1806 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -29.839 AMFE: -0.667 GC content %: 44.740 | |
| Ppatens_Pp3c3_30670V3.3 Pp3c3_30670V3.3 PAC:32940236 |
High | No | 1840 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -29.870 AMFE: -0.665 GC content %: 44.891 | |
| Ppatens_Pp3c3_30670V3.4 Pp3c3_30670V3.4 PAC:32940237 |
High | No | 2019 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -29.797 AMFE: -0.665 GC content %: 44.824 | |
| Ppatens_Pp3c3_30670V3.5 Pp3c3_30670V3.5 PAC:32940232 |
High | No | 1529 | Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -30.340 AMFE: -0.667 GC content %: 45.455 | |
| Ppatens_Pp3c3_30670V3.6 Pp3c3_30670V3.6 PAC:32940233 |
High | No | 1742 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -30.287 AMFE: -0.666 GC content %: 45.465 | |
| Ppatens_Pp3c3_30670V3.7 Pp3c3_30670V3.7 PAC:32940238 |
High | No | 720 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -34.806 AMFE: -0.688 GC content %: 50.556 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
