GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c3_320 Pp3c3_320	Chr03	100382	101929	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c3_320V3.1 Pp3c3_320V3.1 PAC:32943467	High	No	912		Get ORF Coding potential... Type: noncoding Potential: -1.395 Folding energies... MFEI: -28.706 AMFE: -0.659 GC content %: 43.531
Ppatens_Pp3c3_320V3.2 Pp3c3_320V3.2 PAC:32943466	High	No	360		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -28.611 AMFE: -0.589 GC content %: 48.611

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).