GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c3_36980 Pp3c3_36980	Chr03	24794242	24794893	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c3_36980V3.1 Pp3c3_36980V3.1 PAC:32944455	High	No	282		Get ORF Coding potential... Type: noncoding Potential: -0.586 Folding energies... MFEI: -15.390 AMFE: -0.443 GC content %: 34.752
Ppatens_Pp3c3_36980V3.2 Pp3c3_36980V3.2 PAC:32944456	High	No	565		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -16.885 AMFE: -0.497 GC content %: 33.982

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).