GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c3_5330 Pp3c3_5330	Chr03	3511526	3512480	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c3_5330V3.1 Pp3c3_5330V3.1 PAC:32943898	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -28.882 AMFE: -0.724 GC content %: 39.868
Ppatens_Pp3c3_5330V3.2 Pp3c3_5330V3.2 PAC:32943899	High	No	773		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -29.858 AMFE: -0.740 GC content %: 40.362
Ppatens_Pp3c3_5330V3.3 Pp3c3_5330V3.3 PAC:32943897	Low	Yes	258		Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -40.426 AMFE: -0.773 GC content %: 52.326

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).