Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c3_9610 Pp3c3_9610 |
Chr03 | 6896816 | 6900193 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c3_9610V3.1 Pp3c3_9610V3.1 PAC:32943516 |
High | No | 3031 | Get ORF Coding potential... Type: noncoding Potential: -0.905 Folding energies... MFEI: -30.904 AMFE: -0.659 GC content %: 46.882 | |
Ppatens_Pp3c3_9610V3.2 Pp3c3_9610V3.2 PAC:32943517 |
High | No | 3225 | Get ORF Coding potential... Type: noncoding Potential: -0.912 Folding energies... MFEI: -31.212 AMFE: -0.662 GC content %: 47.163 | |
Ppatens_Pp3c3_9610V3.3 Pp3c3_9610V3.3 PAC:32943518 |
High | No | 750 | Get ORF Coding potential... Type: noncoding Potential: -0.636 Folding energies... MFEI: -27.893 AMFE: -0.589 GC content %: 47.333 | |
Ppatens_Pp3c3_9610V3.4 Pp3c3_9610V3.4 PAC:32943515 |
High | No | 2256 | Get ORF Coding potential... Type: noncoding Potential: -0.740 Folding energies... MFEI: -30.749 AMFE: -0.648 GC content %: 47.429 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c3_9610V3.4 | RepBase (RepeatMasker) | 2014-01-31 | COPI2_I-int | |
Ppatens_Pp3c3_9610V3.1 | RepBase (RepeatMasker) | 2014-01-31 | COPI2_I-int | |
Ppatens_Pp3c3_9610V3.2 | RepBase (RepeatMasker) | 2014-01-31 | COPI2_I-int |