Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c4_14040 Pp3c4_14040 |
Chr04 | 9852035 | 9853286 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c4_14040V3.1 Pp3c4_14040V3.1 PAC:32921654 |
High | No | 786 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -25.344 AMFE: -0.595 GC content %: 42.621 | |
Ppatens_Pp3c4_14040V3.2 Pp3c4_14040V3.2 PAC:32921655 |
High | No | 395 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -26.430 AMFE: -0.547 GC content %: 48.354 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c4_14040V3.1 | RepBase (RepeatMasker) | 2014-01-31 | HELMET3 |