GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_17790 Pp3c4_17790	Chr04	12234455	12236549	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_17790V3.1 Pp3c4_17790V3.1 PAC:32921777	High	No	1566		Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -30.549 AMFE: -0.649 GC content %: 47.063
Ppatens_Pp3c4_17790V3.2 Pp3c4_17790V3.2 PAC:32921778	High	No	1642		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -30.548 AMFE: -0.659 GC content %: 46.346
Ppatens_Pp3c4_17790V3.3 Pp3c4_17790V3.3 PAC:32921779	High	No	1457		Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -30.995 AMFE: -0.666 GC content %: 46.534

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).