GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_20270 Pp3c4_20270	Chr04	13725878	13727842	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_20270V3.1 Pp3c4_20270V3.1 PAC:32921471	High	No	810		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -31.062 AMFE: -0.676 GC content %: 45.926
Ppatens_Pp3c4_20270V3.2 Pp3c4_20270V3.2 PAC:32921472	High	No	1070		Get ORF Coding potential... Type: noncoding Potential: -0.684 Folding energies... MFEI: -28.393 AMFE: -0.656 GC content %: 43.271
Ppatens_Pp3c4_20270V3.3 Pp3c4_20270V3.3 PAC:32921473	High	No	1102		Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -28.848 AMFE: -0.665 GC content %: 43.376

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).