Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c4_28750 Pp3c4_28750 |
Chr04 | 19815181 | 19818740 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c4_28750V3.1 Pp3c4_28750V3.1 PAC:32921014 |
High | No | 279 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -32.186 AMFE: -0.628 GC content %: 51.254 | |
Ppatens_Pp3c4_28750V3.2 Pp3c4_28750V3.2 PAC:32921012 |
High | No | 773 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -25.420 AMFE: -0.585 GC content %: 43.467 | |
Ppatens_Pp3c4_28750V3.3 Pp3c4_28750V3.3 PAC:32921013 |
High | No | 2163 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -30.578 AMFE: -0.669 GC content %: 45.677 |