GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_30630 Pp3c4_30630	Chr04	21165601	21168898	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_30630V3.1 Pp3c4_30630V3.1 PAC:32919344	High	No	2763		Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -28.180 AMFE: -0.678 GC content %: 41.585
Ppatens_Pp3c4_30630V3.2 Pp3c4_30630V3.2 PAC:32919343	High	No	1166		Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -25.197 AMFE: -0.669 GC content %: 37.650
Ppatens_Pp3c4_30630V3.3 Pp3c4_30630V3.3 PAC:32919345	High	No	1741		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -29.437 AMFE: -0.666 GC content %: 44.170
Ppatens_Pp3c4_30630V3.4 Pp3c4_30630V3.4 PAC:32919346	High	No	903		Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.899 AMFE: -0.648 GC content %: 41.528

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).