GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c4_570 Pp3c4_570	Chr04	329076	330787	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c4_570V3.1 Pp3c4_570V3.1 PAC:32920321	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.931 Folding energies... MFEI: -26.803 AMFE: -0.615 GC content %: 43.553
Ppatens_Pp3c4_570V3.2 Pp3c4_570V3.2 PAC:32920322	High	No	1185		Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -26.059 AMFE: -0.625 GC content %: 41.688
Ppatens_Pp3c4_570V3.3 Pp3c4_570V3.3 PAC:32920323	High	No	958		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -26.910 AMFE: -0.635 GC content %: 42.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).